diff --git a/usegalaxy.org/machine_learning.yml b/usegalaxy.org/classical_ml_and_automl.yml similarity index 74% rename from usegalaxy.org/machine_learning.yml rename to usegalaxy.org/classical_ml_and_automl.yml index c155574e6..0c7a5f0e0 100644 --- a/usegalaxy.org/machine_learning.yml +++ b/usegalaxy.org/classical_ml_and_automl.yml @@ -1,88 +1,66 @@ -tool_panel_section_label: Machine Learning +tool_panel_section_label: Classical ML and AutoML tools: -- name: multimodal_learner - owner: goeckslab -- name: image_learner - owner: goeckslab - name: tabular_learner owner: goeckslab - name: pycaret_compare owner: goeckslab - name: pycaret_predict owner: goeckslab -- name: model_prediction +- name: sklearn_sample_generator owner: bgruening -- name: keras_model_config +- name: sklearn_train_test_split owner: bgruening -- name: keras_model_builder +- name: sklearn_data_preprocess owner: bgruening -- name: keras_batch_models +- name: sklearn_to_categorical owner: bgruening -- name: sklearn_stacking_ensemble_models +- name: scipy_sparse owner: bgruening -- name: sklearn_train_test_eval +- name: sklearn_feature_selection owner: bgruening -- name: sklearn_estimator_attributes +- name: sklearn_build_pipeline owner: bgruening -- name: sklearn_model_validation +- name: sklearn_model_fit owner: bgruening -- name: sklearn_svm_classifier +- name: sklearn_train_test_eval owner: bgruening -- name: sklearn_sample_generator +- name: sklearn_model_validation owner: bgruening - name: sklearn_searchcv owner: bgruening -- name: sklearn_build_pipeline +- name: sklearn_generalized_linear owner: bgruening -- name: sklearn_pairwise_metrics +- name: sklearn_svm_classifier owner: bgruening - name: sklearn_nn_classifier owner: bgruening -- name: sklearn_numeric_clustering - owner: bgruening - name: sklearn_ensemble owner: bgruening -- name: sklearn_feature_selection - owner: bgruening -- name: sklearn_data_preprocess +- name: sklearn_stacking_ensemble_models owner: bgruening -- name: sklearn_clf_metrics +- name: sklearn_lightgbm owner: bgruening -- name: sklearn_regression_metrics +- name: sklearn_numeric_clustering owner: bgruening - name: sklearn_discriminant_classifier owner: bgruening -- name: sklearn_generalized_linear - owner: bgruening -- name: sklearn_model_fit - owner: bgruening -- name: sklearn_train_test_split +- name: model_prediction owner: bgruening - name: sklearn_fitted_model_eval owner: bgruening -- name: sklearn_to_categorical - owner: bgruening -- name: ml_visualization_ex +- name: sklearn_clf_metrics owner: bgruening -- name: sklearn_lightgbm +- name: sklearn_regression_metrics owner: bgruening -- name: sklearn_pca +- name: sklearn_pairwise_metrics owner: bgruening -- name: keras_train_and_eval +- name: sklearn_estimator_attributes owner: bgruening -- name: scipy_sparse +- name: sklearn_pca owner: bgruening -- name: create_tool_recommendation_model +- name: ml_visualization_ex owner: bgruening - name: chopin2 owner: iuc -- name: flexynesis - owner: bgruening -- name: flexynesis_cbioportal_import - owner: bgruening -- name: flexynesis_infer - owner: bgruening -- name: flexynesis_plot - owner: bgruening -- name: flexynesis_utils +- name: create_tool_recommendation_model owner: bgruening diff --git a/usegalaxy.org/machine_learning.yml.lock b/usegalaxy.org/classical_ml_and_automl.yml.lock similarity index 60% rename from usegalaxy.org/machine_learning.yml.lock rename to usegalaxy.org/classical_ml_and_automl.yml.lock index daf0ca66b..569f5f995 100644 --- a/usegalaxy.org/machine_learning.yml.lock +++ b/usegalaxy.org/classical_ml_and_automl.yml.lock @@ -1,44 +1,8 @@ install_repository_dependencies: false install_resolver_dependencies: false install_tool_dependencies: false -tool_panel_section_label: Machine Learning +tool_panel_section_label: Classical ML and AutoML tools: -- name: multimodal_learner - owner: goeckslab - revisions: - - 00ca2dfe9254 - - 25bb80df7c0c - - 31e251cca67d - - 3719606b94af - - 375c36923da1 - - 499a039871d0 - - 871957823d0c - - 975512caae22 - - a48e750cfd25 - - a5404f55ee6a - - a92f200d296e - - b905deb2f1b4 - - dbf05afb8e6c - - de753cf07008 - - ed2fefc8d892 - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning -- name: image_learner - owner: goeckslab - revisions: - - 13b9963b3e24 - - 2c6624cae3c5 - - 328ff3a13078 - - 8729f69e9207 - - 94cd9ac4a9b1 - - bbf30253c99f - - c460abae83eb - - c5150cceab47 - - ccbcc012d78d - - d17e3a1b8659 - - d5c582cf74bc - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning - name: tabular_learner owner: goeckslab revisions: @@ -61,16 +25,16 @@ tools: - edd515746388 - f38427fed1f9 - f6a65e05d6ec - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning + tool_panel_section_id: classical_ml_and_automl + tool_panel_section_label: Classical ML and AutoML - name: pycaret_compare owner: goeckslab revisions: - 009b18a75dc3 - 02f7746e7772 - 4aa511539199 - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning + tool_panel_section_id: classical_ml_and_automl + tool_panel_section_label: Classical ML and AutoML - name: pycaret_predict owner: goeckslab revisions: @@ -94,93 +58,148 @@ tools: - f2877a8b54e4 - f4cb41f458fd - f5b713d70f1a - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning -- name: model_prediction + tool_panel_section_id: classical_ml_and_automl + tool_panel_section_label: Classical ML and AutoML +- name: sklearn_sample_generator owner: bgruening revisions: - - 1e088aa741eb - - 25b46af53232 - - 29e4122c90de - - 475b5171945f - - 60c726f5cc5e - - 65820fb7257b - - 83228baae3c5 - - 948eca2af157 - - 980bf31faa05 - - 9991c4ddde14 - - b237f27a8afc - - b6c2289292fa - - ce00f1cccb03 - - eae46976fbb8 - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning -- name: keras_model_config + - 04b160a26690 + - 0f460421b212 + - 1fe020b2108f + - 6cf2a66c46f1 + - 7068b5fcd623 + - 7c2e71e4acf3 + - 86c5b627ddb6 + - ab2c393080f9 + - ab9977548806 + - b4ba9602a36e + - db7eb7302fc9 + - e99cccc3ca13 + - eb41d87cb1de + - fed1850f01c3 + tool_panel_section_id: classical_ml_and_automl + tool_panel_section_label: Classical ML and AutoML +- name: sklearn_train_test_split owner: bgruening revisions: - - 00b2ee48b412 - - 00d1889e9ecc - - 01131463df86 - - 0c933465d70e - - 2a853a2d2e72 - - 2b8d85927742 - - 2d8478144bb2 - - 4d81e3e2fb63 - - 61a6132df9e0 - - 8a794e6d3388 - - 94d91334c787 - - b9906ce4756c - - bedbda03c573 - - f22a9297440f - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning -- name: keras_model_builder + - 03611d7232f6 + - 0985b0dd6f1a + - 145208b3579d + - 3312fb686ffb + - 33c564caa3c4 + - 6e25381dad5c + - a2e3cf2f9f40 + - adc5e53d4297 + - b6f5443c4f58 + - ce2fd1edbc6e + - e10ffa9e0b90 + - e8639f65c883 + - fc0f9ba14aaa + tool_panel_section_id: classical_ml_and_automl + tool_panel_section_label: Classical ML and AutoML +- name: sklearn_data_preprocess owner: bgruening revisions: - - 053570bac5ea - - 1f0c955fabc7 - - 20cd4269deb2 - - 522137aaa9c4 - - 5b35833076f0 - - 66d7efc06000 - - 772e0e89fc68 - - 9b6faa256f15 - - beeeda757eba - - c51571d0a0b1 - - e4af79bffd57 - - f7ecdde4b201 - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning -- name: keras_batch_models + - 045faa05e712 + - 0ff864fabfe9 + - 1b5cd2d16fb1 + - 1bef885255e0 + - 50b3e080cef0 + - 6c030fe29722 + - 761269451e98 + - 80074b842ebd + - 826c3e68e7a9 + - a5c2ce4ea328 + - add3c3a7c2b4 + - eb9da067ab26 + - f2234165a453 + tool_panel_section_id: classical_ml_and_automl + tool_panel_section_label: Classical ML and AutoML +- name: sklearn_to_categorical owner: bgruening revisions: - - 03533fa14e77 - - 0dc3027df8f4 - - 1252578525d1 - - 305c1229ac99 - - 3814a92c1416 - - 3b8fa4ea9727 - - 4a5266c96889 - - 508ce0649bec - - 61b2d8f8811e - - 679e4ede1191 - - 77c04469e8b8 - - 7f6079deac6f - - 9d77b259ef27 - - a98b60c639af - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning -- name: sklearn_stacking_ensemble_models + - 14180f9c831e + - 2d53571c2f00 + - 612ca26c197d + - 61634a87efc7 + - 6b59e9b96071 + - 89f11e2b0673 + - a4f18bbb4eca + - caeb57858702 + - f86c0419af43 + - f93f0cdbaf18 + tool_panel_section_id: classical_ml_and_automl + tool_panel_section_label: Classical ML and AutoML +- name: scipy_sparse owner: bgruening revisions: - - 253b3aaf0d91 - - ae4b593c99f8 - - b78007bf1cb8 - - b8378d4791b7 - - b94babda32e4 - - d25127d5f4e0 - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning + - 233aab4c1be8 + - 29200ecec39d + - 42b513bed40b + - 4efac966af2a + - 6d1a9fae57eb + - 92e09b827300 + - 9f9cf31e3111 + - b7e93c1deb3f + - e6893a4bcb7b + tool_panel_section_id: classical_ml_and_automl + tool_panel_section_label: Classical ML and AutoML +- name: sklearn_feature_selection + owner: bgruening + revisions: + - 07b34d5284f6 + - 4483b84310ec + - 5276bdb49315 + - 5773e98921fc + - 5bcf779d901f + - 6d21b03e00a1 + - 74adae8d7b0f + - 96bb4c49e30e + - 9e0e31bd8392 + - a7c667ff83fe + - 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e03a58b31c12 - e23cfe4be9d4 - f6ea9fc38223 - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning -- name: sklearn_estimator_attributes - owner: bgruening - revisions: - - 07843f917990 - - 0a43c856e1d8 - - 30d21a6041f6 - - 3881482e568e - - 5a125d1ac9b9 - - 5ae00d2908f2 - - 867caa39eaa4 - - 89deaf399ff7 - - 9fda0b82f419 - - adaf2457d6ec - - bd27a211182a - - c9ddd20d25d0 - - d0352e8b4c10 - - e19359b23e54 - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning + tool_panel_section_id: classical_ml_and_automl + tool_panel_section_label: Classical ML and AutoML - name: sklearn_model_validation owner: bgruening revisions: @@ -235,45 +235,8 @@ tools: - bacc38e0a29e - bfc7bdfcb423 - e06ab1e112cc - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning -- name: sklearn_svm_classifier - owner: bgruening - revisions: - - 02d2be90dedb - - 0630258dcf35 - - 14fa42b095c4 - - 61461e52c923 - - 6d23883e0b94 - - 73d2ef652879 - 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tool_panel_section_label: Machine Learning + - 02d2be90dedb + - 0630258dcf35 + - 14fa42b095c4 + - 61461e52c923 + - 6d23883e0b94 + - 73d2ef652879 + - 80852884053f + - b7c3e9a3b954 + - d2afc87db26b + - de94341feadb + - f458724cc317 + - f9639b488779 + - fa9d6a4d95ad + tool_panel_section_id: classical_ml_and_automl + tool_panel_section_label: Classical ML and AutoML - name: sklearn_nn_classifier owner: bgruening revisions: @@ -347,27 +310,9 @@ tools: - aa83e7e3c398 - cd02bf168d23 - d33d37f32e54 - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning -- name: sklearn_numeric_clustering - owner: bgruening - revisions: - - 1bdac8249aa1 - - 1dd433d2c92c - - 2d7c60aa6c62 - - 73e7f1c76ece - - 7dd3fb35904f - - 86d4c2b66e16 - - 8eed73e8e04d - - 981a0328d6bb - - ad7e0b4291ee - - aeca97d9a214 - - bb9fc9d46ea4 - - e10e776f2109 - - e13a7c05b3a4 - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning -- name: sklearn_ensemble + tool_panel_section_id: classical_ml_and_automl + tool_panel_section_label: Classical ML and AutoML +- name: sklearn_ensemble owner: bgruening revisions: - 00f01f713c3c @@ -384,83 +329,52 @@ tools: - cab63604ca1d - d868914bce73 - f3dfa4bdf87e - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning -- name: sklearn_feature_selection - owner: bgruening - revisions: - - 07b34d5284f6 - - 4483b84310ec - - 5276bdb49315 - - 5773e98921fc - - 5bcf779d901f - - 6d21b03e00a1 - - 74adae8d7b0f - - 96bb4c49e30e - - 9e0e31bd8392 - - a7c667ff83fe - - ae0fafb53c1d - - c2cd3219543a - - d84b3a229a52 - - fcadeadd51ae - tool_panel_section_id: machine_learning - tool_panel_section_label: Machine Learning -- name: sklearn_data_preprocess + tool_panel_section_id: classical_ml_and_automl + tool_panel_section_label: Classical ML and AutoML +- name: sklearn_stacking_ensemble_models owner: bgruening revisions: - - 045faa05e712 - - 0ff864fabfe9 - - 1b5cd2d16fb1 - - 1bef885255e0 - - 50b3e080cef0 - - 6c030fe29722 - - 761269451e98 - - 80074b842ebd - - 826c3e68e7a9 - - a5c2ce4ea328 - - add3c3a7c2b4 - - eb9da067ab26 - - f2234165a453 - tool_panel_section_id: machine_learning - 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