diff --git a/workflows/transcriptomics/rnaseq-sr/CHANGELOG.md b/workflows/transcriptomics/rnaseq-sr/CHANGELOG.md
index fb8eca1c50..8d422ac420 100644
--- a/workflows/transcriptomics/rnaseq-sr/CHANGELOG.md
+++ b/workflows/transcriptomics/rnaseq-sr/CHANGELOG.md
@@ -1,5 +1,10 @@
 # Changelog
 
+## [1.6] - 2026-07-20
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy2`
+
 ## [1.5] - 2026-07-06
 
 ### Automatic update
diff --git a/workflows/transcriptomics/rnaseq-sr/rnaseq-sr.ga b/workflows/transcriptomics/rnaseq-sr/rnaseq-sr.ga
index e595aa94c7..617b908731 100644
--- a/workflows/transcriptomics/rnaseq-sr/rnaseq-sr.ga
+++ b/workflows/transcriptomics/rnaseq-sr/rnaseq-sr.ga
@@ -1156,7 +1156,7 @@
                     }
                 },
                 "tags": [],
-                "uuid": "151e568d-392e-4c77-a39a-d80f6a1e88e1"
+                "uuid": "a8a35dd9-1706-401c-be69-66a1f7aa2c86"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -1758,7 +1758,7 @@
                     }
                 },
                 "tags": [],
-                "uuid": "b2ff8422-ba39-41b0-903b-c925cdcb6e7f"
+                "uuid": "083ade43-5fa2-4a71-92e0-d36400bd39e1"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -2471,7 +2471,7 @@
                     }
                 },
                 "tags": [],
-                "uuid": "04cf8ab9-1586-4000-9e98-684ebd8bf62e"
+                "uuid": "d961ed7b-494c-47a5-9d20-4f2e0ad3b782"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -2909,7 +2909,7 @@
                     }
                 },
                 "tags": [],
-                "uuid": "09da0dcc-33bd-403f-bbcb-27fbc27beb8b"
+                "uuid": "c3488ec1-2a61-4d6e-995c-95827159e52c"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -2925,7 +2925,7 @@
         },
         "24": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy1",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy2",
             "errors": null,
             "id": 24,
             "input_connections": {
@@ -2984,16 +2984,16 @@
                     "output_name": "stats"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy1",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy2",
             "tool_shed_repository": {
-                "changeset_revision": "fac2260bc88a",
+                "changeset_revision": "0559e0711094",
                 "name": "multiqc",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"image_content_input\": {\"__class__\": \"RuntimeValue\"}, \"png_plots\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"fastp\", \"__current_case__\": 8, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"software_cond\": {\"software\": \"star\", \"__current_case__\": 29, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"log\", \"__current_case__\": 0, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"genecounts\", \"__current_case__\": 1, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}, {\"__index__\": 2, \"software_cond\": {\"software\": \"featureCounts\", \"__current_case__\": 10, \"input\": {\"__class__\": \"ConnectedValue\"}}}], \"title\": \"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
             "tool_uuid": null,
-            "tool_version": "1.35+galaxy1",
+            "tool_version": "1.35+galaxy2",
             "type": "tool",
             "uuid": "3d7edbbf-d92d-46bf-ac11-7ecbd4e8bad0",
             "when": "$(inputs.when)",
@@ -3001,7 +3001,7 @@
         },
         "25": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy1",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy2",
             "errors": null,
             "id": 25,
             "input_connections": {
@@ -3080,16 +3080,16 @@
                     "output_name": "stats"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy1",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy2",
             "tool_shed_repository": {
-                "changeset_revision": "fac2260bc88a",
+                "changeset_revision": "0559e0711094",
                 "name": "multiqc",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"image_content_input\": {\"__class__\": \"RuntimeValue\"}, \"png_plots\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"fastp\", \"__current_case__\": 8, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"software_cond\": {\"software\": \"star\", \"__current_case__\": 29, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"log\", \"__current_case__\": 0, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"genecounts\", \"__current_case__\": 1, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}, {\"__index__\": 2, \"software_cond\": {\"software\": \"featureCounts\", \"__current_case__\": 10, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"software_cond\": {\"software\": \"fastqc\", \"__current_case__\": 9, \"output\": [{\"__index__\": 0, \"type\": \"data\", \"input\": {\"__class__\": \"ConnectedValue\"}}]}}, {\"__index__\": 4, \"software_cond\": {\"software\": \"samtools\", \"__current_case__\": 25, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"idxstats\", \"__current_case__\": 2, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}, {\"__index__\": 5, \"software_cond\": {\"software\": \"picard\", \"__current_case__\": 18, \"output\": [{\"__index__\": 0, \"type\": \"markdups\", \"input\": {\"__class__\": \"ConnectedValue\"}}]}}, {\"__index__\": 6, \"software_cond\": {\"software\": \"rseqc\", \"__current_case__\": 23, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"read_distribution\", \"__current_case__\": 6, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"gene_body_coverage\", \"__current_case__\": 1, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}], \"title\": \"\", \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
             "tool_uuid": null,
-            "tool_version": "1.35+galaxy1",
+            "tool_version": "1.35+galaxy2",
             "type": "tool",
             "uuid": "e5335a24-fec9-422c-b93c-c172ad7e1b8c",
             "when": "$(inputs.when)",
@@ -3216,7 +3216,7 @@
         "RNAseq",
         "transcriptomics"
     ],
-    "uuid": "97b54753-b622-49ad-8124-d4dcb4b98130",
+    "uuid": "66294617-a8dd-40e6-894d-f74d4efc7de8",
     "version": 1,
-    "release": "1.5"
+    "release": "1.6"
 }
\ No newline at end of file