diff --git a/workflows/microbiome/host-contamination-removal/host-contamination-removal-long-reads/CHANGELOG.md b/workflows/microbiome/host-contamination-removal/host-contamination-removal-long-reads/CHANGELOG.md
index 393e7799e8..105db347a6 100644
--- a/workflows/microbiome/host-contamination-removal/host-contamination-removal-long-reads/CHANGELOG.md
+++ b/workflows/microbiome/host-contamination-removal/host-contamination-removal-long-reads/CHANGELOG.md
@@ -1,5 +1,10 @@
 # Changelog
 
+## [0.6] - 2026-07-20
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy2`
+
 ## [0.5] - 2026-07-13
 
 ### Automatic update
diff --git a/workflows/microbiome/host-contamination-removal/host-contamination-removal-long-reads/host-or-contamination-removal-on-long-reads.ga b/workflows/microbiome/host-contamination-removal/host-contamination-removal-long-reads/host-or-contamination-removal-on-long-reads.ga
index 0512cfa4ed..d61752e018 100644
--- a/workflows/microbiome/host-contamination-removal/host-contamination-removal-long-reads/host-or-contamination-removal-on-long-reads.ga
+++ b/workflows/microbiome/host-contamination-removal/host-contamination-removal-long-reads/host-or-contamination-removal-on-long-reads.ga
@@ -382,7 +382,7 @@
         },
         "8": {
             "annotation": "Aggregation of the mapping statistics for all samples",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy1",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy2",
             "errors": null,
             "id": 8,
             "input_connections": {
@@ -427,16 +427,16 @@
                     "output_name": "html_report"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy1",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.35+galaxy2",
             "tool_shed_repository": {
-                "changeset_revision": "fac2260bc88a",
+                "changeset_revision": "0559e0711094",
                 "name": "multiqc",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"image_content_input\": {\"__class__\": \"RuntimeValue\"}, \"png_plots\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"qualimap\", \"__current_case__\": 21, \"input\": {\"__class__\": \"ConnectedValue\"}}}], \"title\": \"Host/Contamination Removal\", \"__page__\": 0, \"__rerun_remap_job_id__\": null}",
             "tool_uuid": null,
-            "tool_version": "1.35+galaxy1",
+            "tool_version": "1.35+galaxy2",
             "type": "tool",
             "uuid": "9bfa844d-9fee-4589-8568-80070c6c6479",
             "when": null,
@@ -454,7 +454,7 @@
         "contamination",
         "long_reads"
     ],
-    "uuid": "77356bff-79be-48bb-a22d-51250c1f49c5",
+    "uuid": "bf66e0e0-1dee-4bdf-87a8-7508e917519e",
     "version": 1,
-    "release": "0.5"
+    "release": "0.6"
 }
\ No newline at end of file