diff --git a/README.md b/README.md index 652c6e7..b78f509 100644 --- a/README.md +++ b/README.md @@ -5,7 +5,8 @@ # pofff: An open-source image-based history-matching framework for the FluidFlower benchmark study using OPM Flow - +
+
This repository contains runscripts to simulate CO2 injection in the [_fluidflower benchmark system_](https://fluidflower.w.uib.no) using the diff --git a/docs/_images/plopm_xco2l.gif b/docs/_images/plopm_xco2l.gif deleted file mode 100644 index 1ed2dd8..0000000 Binary files a/docs/_images/plopm_xco2l.gif and /dev/null differ diff --git a/docs/_images/pofff+plopm_xco2l.gif b/docs/_images/pofff+plopm_xco2l.gif new file mode 100644 index 0000000..fb06a60 Binary files /dev/null and b/docs/_images/pofff+plopm_xco2l.gif differ diff --git a/docs/_sources/examples.rst.txt b/docs/_sources/examples.rst.txt index 35d288f..e3047e2 100644 --- a/docs/_sources/examples.rst.txt +++ b/docs/_sources/examples.rst.txt @@ -105,9 +105,13 @@ Then the following GIF is generated by: .. code-block:: bash - pofff -i appendixb.toml -o plopm -m single -c '5e-2' -f none - plopm -v xco2l -i plopm/PLOPM -d 8,2.5 -mask satnum -m gif -dpi 1000 -f 12 -loop 1 -cformat .2f -cbsfax 0.30,0.01,0.4,0.02 -remove 0,0,1,0 -interval 437.5 -maskthr 1e-5 -tunits h + pofff -i appendixb.toml -o plopm+pofff -m single -c '5e-2' -f none + plopm -v xco2l -i 'pofff+plopm/POFFF+PLOPM' -d 16,5 -mask satnum -m gif -dpi 1000 -f 20 -loop 1 -cformat .1e -cbsfax 0.30,0.01,0.4,0.02 -interval 437.5 -maskthr 1e-5 -tunits h -cnum 5 -clabel 'CO$_2$ mass fraction in liquid [-]' -t 'FluidFlower simulation (GitHub/cssr-tools/pofff),' -.. image:: ./figs/plopm_xco2l.gif +.. figure:: figs/pofff+plopm_xco2l.gif + + The total simulation time for this GIF (five days of experiment) using eight CPUs for OPM Flow in a Mac is **LESS THAN TWO MINUTES!!!** + + See the `plopm online docmunetation `_ for additional information of supported flag parameters to generate customized PNGs and GIFs. diff --git a/docs/examples.html b/docs/examples.html index 0c8fab9..7883c2b 100644 --- a/docs/examples.html +++ b/docs/examples.html @@ -173,12 +173,17 @@

Visualization
pofff -i appendixb.toml -o plopm -m single -c '5e-2' -f none
-plopm -v xco2l -i plopm/PLOPM -d 8,2.5 -mask satnum -m gif -dpi 1000 -f 12 -loop 1 -cformat .2f -cbsfax 0.30,0.01,0.4,0.02 -remove 0,0,1,0 -interval 437.5 -maskthr 1e-5 -tunits h
+
pofff -i appendixb.toml -o plopm+pofff -m single -c '5e-2' -f none
+plopm -v xco2l -i 'pofff+plopm/POFFF+PLOPM' -d 16,5 -mask satnum -m gif -dpi 1000 -f 20 -loop 1 -cformat .1e -cbsfax 0.30,0.01,0.4,0.02 -interval 437.5 -maskthr 1e-5 -tunits h -cnum 5 -clabel 'CO$_2$ mass fraction in liquid [-]' -t 'FluidFlower simulation (GitHub/cssr-tools/pofff),'
 

 

 

-_images/plopm_xco2l.gif
+

+_images/pofff%2Bplopm_xco2l.gif
+

+
The total simulation time for this GIF (five days of experiment) using eight CPUs for OPM Flow in a Mac is LESS THAN TWO MINUTES!!!

+

+

 
See the plopm online docmunetation for additional information of supported flag parameters to generate customized PNGs and GIFs.

 
 
diff --git a/docs/genindex.html b/docs/genindex.html
index 070a7b9..70bac8d 100644
--- a/docs/genindex.html
+++ b/docs/genindex.html
@@ -634,7 +634,7 @@ 
P

       
       
  • plot_cumulative_misfit() (in module pofff.visualization.everert)
 
    • 
-      
  • plot_hm_missmatch() (in module pofff.visualization.everert)
+      
  • plot_hm_mismatch() (in module pofff.visualization.everert)
 
    • 
       
  • plot_misfit() (in module pofff.visualization.everert)
 
    • 
diff --git a/docs/objects.inv b/docs/objects.inv
index f44eaae..bda7ed1 100644
Binary files a/docs/objects.inv and b/docs/objects.inv differ
diff --git a/docs/pofff.html b/docs/pofff.html
index bd13026..367226f 100644
--- a/docs/pofff.html
+++ b/docs/pofff.html
@@ -223,7 +223,7 @@ 
    Subpackagesmain()
 
  • parse_args()
    • 
 
  • plot_cumulative_misfit()
    • 
-
  • plot_hm_missmatch()
    • 
+
  • plot_hm_mismatch()
    • 
 
  • plot_misfit()
    • 
 
  • plot_observable_distribution()
    • 
 
  • plot_optimization()
    • 
diff --git a/docs/pofff.visualization.everert.html b/docs/pofff.visualization.everert.html
index 4fff9e5..9a882e2 100644
--- a/docs/pofff.visualization.everert.html
+++ b/docs/pofff.visualization.everert.html
@@ -303,8 +303,8 @@
 
 
 
    
-
    
-pofff.visualization.everert.plot_hm_missmatch(cfg: Config, state: EnsembleState)
    
+
    
+pofff.visualization.everert.plot_hm_mismatch(cfg: Config, state: EnsembleState)
    
 
    Plot ensemble-mean misfit per iteration.
    
 
    
 
diff --git a/docs/pofff.visualization.html b/docs/pofff.visualization.html
index 0c66928..aac7239 100644
--- a/docs/pofff.visualization.html
+++ b/docs/pofff.visualization.html
@@ -148,7 +148,7 @@ 
    Submodulesmain()
 
  • parse_args()
    • 
 
  • plot_cumulative_misfit()
    • 
-
  • plot_hm_missmatch()
    • 
+
  • plot_hm_mismatch()
    • 
 
  • plot_misfit()
    • 
 
  • plot_observable_distribution()
    • 
 
  • plot_optimization()
    • 
diff --git a/docs/searchindex.js b/docs/searchindex.js
index d8a4770..11ea827 100644
--- a/docs/searchindex.js
+++ b/docs/searchindex.js
@@ -1 +1 @@
-Search.setIndex({"alltitles":{"About pofff":[[0,null]],"Adding your results":[[4,"adding-your-results"]],"Binary packages":[[6,"binary-packages"]],"Brew formula for macOS":[[6,"brew-formula-for-macos"]],"Citing":[[0,"citing"]],"Concept":[[7,"concept"]],"Configuration file":[[2,null]],"Contribute to the software":[[3,"contribute-to-the-software"]],"Contributing":[[3,null]],"ERT":[[9,"ert"]],"Everest":[[9,"everest"]],"Examples":[[4,null]],"Ground Rules":[[3,"ground-rules"]],"Hello world":[[4,"hello-world"]],"History matching":[[4,"history-matching"]],"Indices and tables":[[5,"indices-and-tables"]],"Installation":[[6,null]],"Introduction":[[7,null]],"Module contents":[[10,"module-pofff"],[11,"module-pofff.config"],[13,"module-pofff.core"],[15,"module-pofff.jobs"],[19,"module-pofff.utils"],[24,"module-pofff.visualization"]],"OPM Flow":[[6,"opm-flow"]],"Output folder":[[9,null]],"Overview":[[7,"overview"]],"Publication":[[30,null]],"Python 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\ No newline at end of file
diff --git a/docs/text/examples.rst b/docs/text/examples.rst
index 35d288f..e3047e2 100644
--- a/docs/text/examples.rst
+++ b/docs/text/examples.rst
@@ -105,9 +105,13 @@ Then the following GIF is generated by:
 
     .. code-block:: bash
 
-        pofff -i appendixb.toml -o plopm -m single -c '5e-2' -f none
-        plopm -v xco2l -i plopm/PLOPM -d 8,2.5 -mask satnum -m gif -dpi 1000 -f 12 -loop 1 -cformat .2f -cbsfax 0.30,0.01,0.4,0.02 -remove 0,0,1,0 -interval 437.5 -maskthr 1e-5 -tunits h
+        pofff -i appendixb.toml -o plopm+pofff -m single -c '5e-2' -f none
+        plopm -v xco2l -i 'pofff+plopm/POFFF+PLOPM' -d 16,5 -mask satnum -m gif -dpi 1000 -f 20 -loop 1 -cformat .1e -cbsfax 0.30,0.01,0.4,0.02 -interval 437.5 -maskthr 1e-5 -tunits h -cnum 5 -clabel 'CO$_2$ mass fraction in liquid [-]' -t 'FluidFlower simulation (GitHub/cssr-tools/pofff),'
 
-.. image:: ./figs/plopm_xco2l.gif
+.. figure:: figs/pofff+plopm_xco2l.gif
+
+    The total simulation time for this GIF (five days of experiment) using eight CPUs for OPM Flow in a Mac is **LESS THAN TWO MINUTES!!!**
+
+   
 
 See the `plopm online docmunetation `_ for additional information of supported flag parameters to generate customized PNGs and GIFs.
diff --git a/docs/text/figs/plopm_xco2l.gif b/docs/text/figs/plopm_xco2l.gif
deleted file mode 100644
index 1ed2dd8..0000000
Binary files a/docs/text/figs/plopm_xco2l.gif and /dev/null differ
diff --git a/docs/text/figs/pofff+plopm_xco2l.gif b/docs/text/figs/pofff+plopm_xco2l.gif
new file mode 100644
index 0000000..fb06a60
Binary files /dev/null and b/docs/text/figs/pofff+plopm_xco2l.gif differ
diff --git a/examples/ert.toml b/examples/ert.toml
index ff3f6ea..ed1dcd3 100644
--- a/examples/ert.toml
+++ b/examples/ert.toml
@@ -30,7 +30,7 @@ krn="(max(0, (1 - sw - sni) / (1 - sni))) ** nkrn"         #Non-wetting rel perm
 cap="pen * ((sw-swi) / (1-swi)) ** (-(1.0 / npen))"        #Capillary pressure saturation function [Pa]
 
 # Ert
-ertargs = "test_run" # Command line for Ert: gui, test_run, ensemble_experiment, ensemble_smoother, iterative_ensemble_smoother, and es_mda
+ertargs = "es_mda --weights 1" # Command line for Ert: gui, test_run, ensemble_experiment, ensemble_smoother, iterative_ensemble_smoother, and es_mda
 min_realizations_success = 0 # Minimum number of simulations that must have succeeded for the simulation to be regarded as a success.
 ensembles = 8 # Number of members in each ensemble
 random_seed = 7 # Set a specific seed for reproducibility; a value of 0 means no seed (rng for everest and random_seed for ert)
diff --git a/examples/everest.toml b/examples/everest.toml
index 86c7048..1873513 100644
--- a/examples/everest.toml
+++ b/examples/everest.toml
@@ -31,7 +31,7 @@ cap="pen * ((sw-swi) / (1-swi)) ** (-(1.0 / npen))"        #Capillary pressure s
 
 # Everest
 min_realizations_success = 0 # Minimum number of simulations that must have succeeded for the simulation to be regarded as a success
-max_function_evaluations = 2 # Maximum number of simulations
+max_function_evaluations = 20 # Maximum number of simulations
 rng = 7 # Set a specific seed for reproducibility; a value of 0 means no seed (rng for everest and random_seed for ert)
 cores = 8 # Maximum number of simulations running in parallel
 maxtime = 120 # Maximum runtime in seconds of a realization; a value of 0 means unlimited runtime
diff --git a/pyproject.toml b/pyproject.toml
index 614d489..0b4681e 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -23,7 +23,7 @@ classifiers = [
 ]
 dependencies = [
     "alive-progress",
-    "ert<=21.0.6",
+    "ert<=21.0.7",
     "iterative_ensemble_smoother",
     "mako",
     "matplotlib",
@@ -36,7 +36,7 @@ dependencies = [
     "scipy",
     "shapely"
 ]
-requires-python = ">=3.11"
+requires-python = ">=3.12"
 
 [project.scripts]
 pofff = "pofff.core.pofff:main"
diff --git a/src/pofff/fluidflower/general/evaluation/emd.py b/src/pofff/fluidflower/general/evaluation/emd.py
index 0fe0b87..88fb4cc 100644
--- a/src/pofff/fluidflower/general/evaluation/emd.py
+++ b/src/pofff/fluidflower/general/evaluation/emd.py
@@ -43,10 +43,6 @@ def calculateEMD(inFileName1, inFileName2):
     a_flat = a.flatten(order="F")
     b_flat = b.flatten(order="F")
 
-    # Cell centers of all cells - x and y coordinates.
-    cc_x = np.zeros((Nx, Ny), dtype=float).flatten("F")
-    cc_y = np.zeros((Nx, Ny), dtype=float).flatten("F")
-
     cc_x, cc_y = np.meshgrid(np.arange(Nx), np.arange(Ny), indexing="ij")
 
     cc_x_flat = cc_x.flatten("F") / Nx * 2.8 + 5e-3 * 280 / Nx
diff --git a/src/pofff/jobs/metric.py b/src/pofff/jobs/metric.py
index b2b28ce..7ec3465 100755
--- a/src/pofff/jobs/metric.py
+++ b/src/pofff/jobs/metric.py
@@ -49,10 +49,6 @@ def calculate_emd(file_1, file_2):
     a_flat = a_1.flatten(order="F")
     b_flat = b_1.flatten(order="F")
 
-    # --- Cell center coordinates (fixed definition) ---
-    cc_x = np.zeros((n_x, n_z), dtype=float).flatten("F")
-    cc_y = np.zeros((n_x, n_z), dtype=float).flatten("F")
-
     cc_x, cc_y = np.meshgrid(np.arange(n_x), np.arange(n_z), indexing="ij")
 
     cc_x_flat = cc_x.flatten("F") / n_x * 2.8 + 5e-3 * 280 / n_x
diff --git a/src/pofff/visualization/everert.py b/src/pofff/visualization/everert.py
index 545ccb5..0f3f8ed 100644
--- a/src/pofff/visualization/everert.py
+++ b/src/pofff/visualization/everert.py
@@ -296,7 +296,7 @@ def plot_misfit(cfg: Config, state: EnsembleState):
     ax.set_title(
         r"$O_{i,j}=\frac{1}{2N_{obs}}\sum_n^{N_{obs}}((d^{n}_{i,j}-d^{n})/\sigma_n)^2$"
     )
-    save_figure(fig, cfg.path / "figures/dist_missmatch.png")
+    save_figure(fig, cfg.path / "figures/dist_mismatch.png")
 
 
 def plot_parameter_distributions(cfg: Config, state: EnsembleState):
@@ -542,7 +542,7 @@ def plot_observable_distribution(cfg: Config, state: EnsembleState):
     save_figure(fig, cfg.path / "figures/dist_observable.png")
 
 
-def plot_hm_missmatch(cfg: Config, state: EnsembleState):
+def plot_hm_mismatch(cfg: Config, state: EnsembleState):
     """Plot ensemble-mean misfit per iteration."""
     fig, ax = plt.subplots()
 
@@ -561,7 +561,7 @@ def plot_hm_missmatch(cfg: Config, state: EnsembleState):
     ax.set_xticks(range(state.n_i))
     ax.legend()
 
-    save_figure(fig, cfg.path / "figures/hm_missmatch.png")
+    save_figure(fig, cfg.path / "figures/hm_mismatch.png")
 
 
 def plot_cumulative_misfit(cfg: Config, state: EnsembleState, tab20):
@@ -670,7 +670,7 @@ def main():
                 read_realisation(cfg, state, i, j)
 
         plot_simulation_ensemble(cfg, state, tab20)
-        plot_hm_missmatch(cfg, state)
+        plot_hm_mismatch(cfg, state)
         plot_misfit(cfg, state)
         plot_observable_distribution(cfg, state)
         plot_parameter_distributions(cfg, state)
diff --git a/tests/test_2_ert.py b/tests/test_2_ert.py
index edae12f..5bcd401 100644
--- a/tests/test_2_ert.py
+++ b/tests/test_2_ert.py
@@ -27,5 +27,5 @@ def test_ert(tmp_path, monkeypatch):
         check=True,
     )
     base = tmp_path / "ert" / "figures"
-    assert (base / "hm_missmatch.png").is_file()
+    assert (base / "hm_mismatch.png").is_file()
     assert (base / "best_simulation" / "spatial_map_0.25h.csv").is_file()