From 78268b5eb7686ae6b8ed636a65ed1f712f9bb5e6 Mon Sep 17 00:00:00 2001 From: Chen Yang Date: Wed, 23 Jul 2025 06:21:08 -0500 Subject: [PATCH] Add mLLMCelltype: Cell type annotation tool using multiple LLMs mLLMCelltype is a comprehensive R/Python package for automated cell type annotation in single-cell RNA-seq data using multiple large language models (OpenAI, Anthropic, Google Gemini, etc.). It supports both R and Python environments with features like consensus annotation, interactive refinement, and custom base URL support for enterprise deployments. GitHub: https://github.com/cafferychen777/mLLMCelltype Paper: https://doi.org/10.1101/2025.04.10.647852 --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index 51bf3b2..809a954 100644 --- a/README.md +++ b/README.md @@ -33,6 +33,7 @@ Have fun! * GPT-based chatbot fine-tuned for bioinformatics https://ai.tinybio.cloud/chat (discussed on [Biostars](https://www.biostars.org/p/9565757/)) * Very powerful question answering using GPT and internet searches: https://www.perplexity.ai/ * Python framework for connecting conversational AI to bioinformatics pipelines https://github.com/biocypher/biochatter and [ChatGSE](https://chat.biocypher.org) +* mLLMCelltype: Cell type annotation for single-cell RNA-seq using multiple LLMs https://github.com/cafferychen777/mLLMCelltype ## Prompt Engineering