fieldbioinformatics/pyproject.toml at master · artic-network/fieldbioinformatics · GitHub

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[build-system]
requires = [
    "setuptools>=61.2",
]
build-backend = "setuptools.build_meta"

[project]
name = "artic"
version = "1.11.2"
authors = [
    { name = "Nick Loman", email = "n.j.loman@bham.ac.uk" },
]
maintainers = [
    { name = "Sam Wilkinson", email = "s.a.j.wilkinson@bham.ac.uk" },
]
description = "``artic`` is a pipeline for working with viral amplicon sequencing data"
classifiers = [
    "Programming Language :: Python :: 3",
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
requires-python = ">=3.7"

[project.readme]
file = "README.md"
content-type = "text/markdown"

[project.scripts]
artic = "artic.pipeline:main"
margin_cons = "artic.margin_cons:main"
vcfextract = "artic.vcfextract:main"
artic_vcf_merge = "artic.vcf_merge:main"
artic_vcf_filter = "artic.vcf_filter:main"
artic_make_depth_mask = "artic.make_depth_mask:main"
artic_fasta_header = "artic.fasta_header:main"
artic_mask = "artic.mask:main"
artic_get_models = "artic.get_models:main"
artic_get_scheme = "artic.get_scheme:main"

[tool.setuptools]
zip-safe = false
include-package-data = true
license-files = [
    "LICENSE",
]

[tool.setuptools.packages.find]
namespaces = false

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = ["*_unit_test.py", "*_validator.py"]
python_classes = ["Test*"]
python_functions = ["test_*"]
markers = [
    "slow: integration tests that download data",
]

[tool.coverage.run]
source = ["artic"]
omit = ["artic/deprecated/*"]

[tool.coverage.report]
show_missing = true