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Development - #1527

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NishaSharma14 wants to merge 25 commits into
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Open

Development#1527
NishaSharma14 wants to merge 25 commits into
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development

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@NishaSharma14

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NishaSharma14 and others added 4 commits August 18, 2026 12:37
…1526)

* feat: trigger Bagit Metadata Extraction Job on Project Publication
with Downloadable Archive

* test: fix failing tests

* fix: copilot review changes

* fix: update the email template for BagIt generation success notification
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codecov Bot commented Aug 20, 2026

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Codecov Report

❌ Patch coverage is 78.20513% with 51 lines in your changes missing coverage. Please review.
✅ Project coverage is 80.26%. Comparing base (0f7646f) to head (5f82224).
⚠️ Report is 1 commits behind head on main.

Files with missing lines Patch % Lines
...otifications/BagitGenerationFailedNotification.php 22.22% 14 Missing ⚠️
app/Support/Nmr/DatasetSpectraInfoExtractor.php 75.92% 13 Missing ⚠️
app/Mail/BagitGenerationFailed.php 0.00% 10 Missing ⚠️
...bs/ProcessMetadataExtractionBagitGenerationJob.php 93.63% 7 Missing ⚠️
...fications/BagitGenerationSucceededNotification.php 60.00% 6 Missing ⚠️
app/Http/Controllers/API/SearchController.php 91.66% 1 Missing ⚠️
Additional details and impacted files
@@             Coverage Diff              @@
##               main    #1527      +/-   ##
============================================
- Coverage     80.33%   80.26%   -0.08%     
- Complexity     4416     4483      +67     
============================================
  Files           289      293       +4     
  Lines         16241    16430     +189     
============================================
+ Hits          13048    13187     +139     
- Misses         3193     3243      +50     
Flag Coverage Δ
unittests 80.26% <78.20%> (-0.08%) ⬇️

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NishaSharma14 and others added 2 commits September 1, 2026 11:41
* fix(bagit):Move BagIt archive downloads into public download menu

* commit manifest

* fix: remove repeated download button
NMRium info for 2D spectra often stores frequencies, filters, and probe
fields as arrays, which caused Array to string conversion during bulk extract.

Co-authored-by: Nisha Sharma <nisha.sharma@uni-jena.de>
NishaSharma14 and others added 3 commits September 7, 2026 12:19
* build(deploy): refresh OpenAPI docs after deployments

Regenerate L5 Swagger docs and publish public/api-docs.json as part of the
shared post-deploy routine for both dev and prod deployments, so API docs stay
in sync with deployed code after build, restart, or successful image deploy.

* Add check for OpenAPI documentation refresh status

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* Update log message for deployment script

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* Add check to skip OpenAPI docs refresh if already done

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

---------

Co-authored-by: Chandu Nainala <mailcs76@gmail.com>
Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>
Match compound tag searches against generated tag slugs instead of extracting
translated tag names. This avoids PostgreSQL SQL_ASCII failures when production
tag JSON contains escaped Unicode values such as Greek symbols.

Validated with:
./vendor/bin/sail artisan test tests/API/SearchControllerTest.php
* fix: optimize ceph backup retention and reduce storage usage
- enable gzip compression for PostgreSQL dumps
- keep daily backups database-only
- monitor the actual Ceph backup disk
- tighten retention with weekly/monthly pruning and max storage cap

* fix: copilot review changes

* chore:composer update

* Enhance warning log assertion in DataBackupJobTest

Co-authored-by: Copilot Autofix powered by AI <175728472+Copilot@users.noreply.github.com>

* fix(backup): retain yearly backups for 10 years

* fix(backup): increase maximum backup storage limit to 300GB

* docs(backup): enhance backup and retention policy details across documentation
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2 participants